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Troap trophinin associated protein [ Mus musculus (house mouse) ]

Gene ID: 78733, updated on 28-Oct-2024

Summary

Official Symbol
Troapprovided by MGI
Official Full Name
trophinin associated proteinprovided by MGI
Primary source
MGI:MGI:1925983
See related
Ensembl:ENSMUSG00000032783 AllianceGenome:MGI:1925983
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
tastin; E130301L11Rik
Summary
Predicted to be involved in cell adhesion. Predicted to be located in cytoplasm. Orthologous to human TROAP (trophinin associated protein). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Broad expression in limb E14.5 (RPKM 9.0), CNS E11.5 (RPKM 8.9) and 20 other tissues See more
Orthologs
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Genomic context

See Troap in Genome Data Viewer
Location:
15 F1; 15 55.8 cM
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (98972854..98981290)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (99074973..99083409)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene peripherin Neighboring gene predicted gene, 34284 Neighboring gene STARR-positive B cell enhancer ABC_E947 Neighboring gene microRNA 6960 Neighboring gene complement component 1, q subcomponent-like 4 Neighboring gene DnaJ heat shock protein family (Hsp40) member C22

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
tastin
Names
trophinin-assisting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162506.1NP_001155978.1  tastin

    See identical proteins and their annotated locations for NP_001155978.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    BC100405, BC145227
    Consensus CDS
    CCDS57008.1
    UniProtKB/Swiss-Prot
    B7ZNG4, Q497S4, Q8BWP3
    Related
    ENSMUSP00000155404.2, ENSMUST00000230054.2
    Conserved Domains (1) summary
    PHA03247
    Location:473642
    PHA03247; large tegument protein UL36; Provisional
  2. NM_030159.1NP_084435.1  tastin

    See identical proteins and their annotated locations for NP_084435.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    BC080746, BC100405, BC145227
    Consensus CDS
    CCDS57008.1
    UniProtKB/Swiss-Prot
    B7ZNG4, Q497S4, Q8BWP3
    Related
    ENSMUSP00000035389.7, ENSMUST00000039665.8
    Conserved Domains (1) summary
    PHA03247
    Location:473642
    PHA03247; large tegument protein UL36; Provisional

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    98972854..98981290
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030248822.1XP_030104682.1  tastin isoform X2

    Conserved Domains (1) summary
    PHA03247
    Location:166335
    PHA03247; large tegument protein UL36; Provisional
  2. XM_036159638.1XP_036015531.1  tastin isoform X1

    Conserved Domains (1) summary
    PHA03247
    Location:227396
    PHA03247; large tegument protein UL36; Provisional