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LOC8062328 proline synthase co-transcribed bacterial homolog protein [ Sorghum bicolor (sorghum) ]

Gene ID: 8062328, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8062328
Gene description
proline synthase co-transcribed bacterial homolog protein
Locus tag
SORBI_3003G426900
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8062328 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 3 NC_012872.2 (73046757..73048701, complement)

Chromosome 3 - NC_012872.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8062327 Neighboring gene uncharacterized LOC8077356 Neighboring gene CSC1-like protein At3g54510 Neighboring gene flowering time control protein FY Neighboring gene probable ADP-ribosylation factor GTPase-activating protein AGD11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012872.2 Chromosome 3 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
proline synthase co-transcribed bacterial homolog protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012872.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    73046757..73048701 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021455404.1 → XP_021311079.1  proline synthase co-transcribed bacterial homolog protein isoform X2

    UniProtKB/TrEMBL
    A0A1W0W1G8
    Conserved Domains (1) summary
    cd06822
    Location:45 → 211
    PLPDE_III_YBL036c_euk; Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins

  2. XM_002459060.2 → XP_002459105.1  proline synthase co-transcribed bacterial homolog protein isoform X1

    See identical proteins and their annotated locations for XP_002459105.1

    UniProtKB/TrEMBL
    A0A921RLF9, C5XHW3
    Conserved Domains (1) summary
    cd06822
    Location:45 → 238
    PLPDE_III_YBL036c_euk; Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins
Nucleotide Protein
Heading Accession and Version

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