U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC8075982 proline synthase co-transcribed bacterial homolog protein [ Sorghum bicolor (sorghum) ]

Gene ID: 8075982, updated on 22-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC8075982
Gene description
proline synthase co-transcribed bacterial homolog protein
Locus tag
SORBI_3009G045100
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC8075982 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 9 NC_012878.2 (4297312..4300957, complement)

Chromosome 9 - NC_012878.2Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 Neighboring gene anaphase-promoting complex subunit 7 Neighboring gene double-stranded RNA-binding protein 2 Neighboring gene transport inhibitor response 1-like protein Os05g0150500

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_012878.2 Chromosome 9 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
proline synthase co-transcribed bacterial homolog protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012878.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    4297312..4300957 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002440554.2 → XP_002440599.1  proline synthase co-transcribed bacterial homolog protein

    See identical proteins and their annotated locations for XP_002440599.1

    UniProtKB/TrEMBL
    A0A921Q8K7, C5Z044
    Conserved Domains (1) summary
    cd06822
    Location:35 → 235
    PLPDE_III_YBL036c_euk; Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials