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PF3D7_1035000 U2 snRNA/tRNA pseudouridine synthase, putative [ Plasmodium falciparum 3D7 ]

Gene ID: 810498, updated on 12-Sep-2024

Summary

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Gene symbol
PF3D7_1035000
Gene description
U2 snRNA/tRNA pseudouridine synthase, putative
Locus tag
PF3D7_1035000
See related
PlasmoDB:PF3D7_1035000; VEuPathDB:PF3D7_1035000
Gene type
protein coding
RNA name
U2 snRNA/tRNA pseudouridine synthase, putative
RefSeq status
PROVISIONAL
Organism
Plasmodium falciparum 3D7 (isolate: 3D7)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
Orthologs
all
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Genomic context

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See PF3D7_1035000 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
1
Sequence:
Chromosome: 10; NC_037281.1 (1386649..1389630, complement)

Chromosome 10 - NC_037281.1Genomic Context describing neighboring genes Neighboring gene conserved protein, unknown function Neighboring gene methionine--tRNA ligase Neighboring gene probable protein, unknown function Neighboring gene S-antigen

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037281.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by GeneDB

Function Evidence Code Pubs
enables pseudouridine synthase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA pseudouridine synthesis ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within snRNA pseudouridine synthesis ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
U2 snRNA/tRNA pseudouridine synthase, putative
XP_001347625.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_037281.1 Reference assembly

    Range
    1386649..1389630 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001347589.1 → XP_001347625.1  U2 snRNA/tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7]

    See identical proteins and their annotated locations for XP_001347625.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2I0BR23, Q8IJ59, W7JS12
    Conserved Domains (2) summary
    cd02576
    Location:444 → 991
    PseudoU_synth_ScPUS7; Pseudouridine synthase, TruD family
    cl00130
    Location:24 → 52
    PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)
Nucleotide Protein
Heading Accession and Version

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