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PF3D7_1150300 rifin [ Plasmodium falciparum 3D7 ]

Gene ID: 811052, updated on 17-May-2024

Summary

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Gene symbol
PF3D7_1150300
Gene description
rifin
Locus tag
PF3D7_1150300
See related
PlasmoDB:PF3D7_1150300; VEuPathDB:PF3D7_1150300
Gene type
protein coding
RNA name
rifin
RefSeq status
PROVISIONAL
Organism
Plasmodium falciparum 3D7 (isolate: 3D7)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
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Genomic context

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See PF3D7_1150300 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Sequence:
Chromosome: 11; NC_037282.1 (2021854..2023034, complement)

Chromosome 11 - NC_037282.1Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene rifin Neighboring gene erythrocyte membrane protein 1, PfEMP1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037282.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RIFINs are adhesins implicated in severe Plasmodium falciparum malaria. Goel S, et al. Nat Med, 2015 Apr. PMID 25751816
  2. Rifins: a second family of clonally variant proteins expressed on the surface of red cells infected with Plasmodium falciparum. Kyes SA, et al. Proc Natl Acad Sci U S A, 1999 Aug 3. PMID 10430943, Free PMC Article
  3. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by GeneDB

Process Evidence Code Pubs
acts_upstream_of_or_within adhesion of symbiont to microvasculature IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within antigenic variation TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within modulation by symbiont of host erythrocyte aggregation IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in Maurer's cleft IDA
Inferred from Direct Assay
more info
 PubMed 
located_in host cell plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in symbiont-containing vacuole IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
rifin

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_037282.1 Reference assembly

    Range
    2021854..2023034 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001348139.1 → XP_001348175.1  rifin [Plasmodium falciparum 3D7]

    See identical proteins and their annotated locations for XP_001348175.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2I0BVG3, Q8IHM1, W7KES5
    Conserved Domains (1) summary
    PTZ00046
    Location:1 → 341
    PTZ00046; rifin; Provisional
Nucleotide Protein
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Research Materials