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PF3D7_0502000 vacuolar protein sorting-associated protein 11, putative [ Plasmodium falciparum 3D7 ]

Gene ID: 812859, updated on 12-Sep-2024

Summary

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Gene symbol
PF3D7_0502000
Gene description
vacuolar protein sorting-associated protein 11, putative
Locus tag
PF3D7_0502000
See related
PlasmoDB:PF3D7_0502000; VEuPathDB:PF3D7_0502000
Gene type
protein coding
RNA name
vacuolar protein sorting-associated protein 11, putative
RefSeq status
PROVISIONAL
Organism
Plasmodium falciparum 3D7 (isolate: 3D7)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
Orthologs
all
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Genomic context

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See PF3D7_0502000 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_004326.2 (97657..101895)

Chromosome 5 - NC_004326.2Genomic Context describing neighboring genes Neighboring gene chromatin assembly factor 1 subunit A Neighboring gene conserved protein, unknown function Neighboring gene HCNGP-like protein Neighboring gene protein Mpv17, putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_004326.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum. Oehring SC, et al. Genome Biol, 2012 Nov 26. PMID 23181666, Free PMC Article
  2. A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, et al. Nature, 2005 Nov 3. PMID 16267556
  3. Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Hall N, et al. Nature, 2002 Oct 3. PMID 12368867

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by GeneDB

Function Evidence Code Pubs
enables zinc ion binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular protein transport ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within vesicle-mediated transport ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 11, putative

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004326.2 Reference assembly

    Range
    97657..101895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001351543.1 → XP_001351579.1  vacuolar protein sorting-associated protein 11, putative [Plasmodium falciparum 3D7]

    See identical proteins and their annotated locations for XP_001351579.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q8I480
    UniProtKB/TrEMBL
    A0A024XBW9, A0A2I0BTZ3
    Conserved Domains (5) summary
    PTZ00121
    Location:374 → 606
    PTZ00121; MAEBL; Provisional
    CHL00117
    Location:3 → 611
    rpoC2; RNA polymerase beta'' subunit; Reviewed
    cd16688
    Location:1188 → 1224
    RING-H2_Vps11; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 11 homolog (Vps11) and similar proteins
    pfam16228
    Location:899 → 978
    DUF4887; Domain of unknown function (DUF4887)
    pfam12451
    Location:1239 → 1269
    VPS11_C; Vacuolar protein sorting protein 11 C terminal
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8I480.1

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