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PF3D7_1350200 small nuclear ribonucleoprotein E, putative [ Plasmodium falciparum 3D7 ]

Gene ID: 813814, updated on 12-Sep-2024

Summary

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Gene symbol
PF3D7_1350200
Gene description
small nuclear ribonucleoprotein E, putative
Locus tag
PF3D7_1350200
See related
PlasmoDB:PF3D7_1350200; VEuPathDB:PF3D7_1350200
Gene type
protein coding
RNA name
small nuclear ribonucleoprotein E, putative
RefSeq status
PROVISIONAL
Organism
Plasmodium falciparum 3D7 (isolate: 3D7)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
Orthologs
all
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Genomic context

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See PF3D7_1350200 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
4
Sequence:
Chromosome: 13; NC_004331.3 (2009477..2010281, complement)

Chromosome 13 - NC_004331.3Genomic Context describing neighboring genes Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene lysine--tRNA ligase Neighboring gene conserved protein, unknown function Neighboring gene ubiquitin-activating enzyme E1, putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_004331.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by GeneDB

Process Evidence Code Pubs
acts_upstream_of_or_within mRNA splicing, via spliceosome ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within spliceosomal snRNP assembly ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
small nuclear ribonucleoprotein E, putative

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004331.3 Reference assembly

    Range
    2009477..2010281 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001350179.1 → XP_001350215.1  small nuclear ribonucleoprotein E, putative [Plasmodium falciparum 3D7]

    See identical proteins and their annotated locations for XP_001350215.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0L1IGU5, A0A0L7KD70, A0A2I0BRN0, Q8IDJ7, W7FRH1
    Conserved Domains (1) summary
    PTZ00138
    Location:1 → 89
    PTZ00138; small nuclear ribonucleoprotein; Provisional
Nucleotide Protein
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