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PF3D7_1325000 U6 snRNA-associated Sm-like protein LSm6, putative [ Plasmodium falciparum 3D7 ]

Gene ID: 814113, updated on 12-Sep-2024

Summary

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Gene symbol
PF3D7_1325000
Gene description
U6 snRNA-associated Sm-like protein LSm6, putative
Locus tag
PF3D7_1325000
See related
PlasmoDB:PF3D7_1325000; VEuPathDB:PF3D7_1325000
Gene type
protein coding
RNA name
U6 snRNA-associated Sm-like protein LSm6, putative
RefSeq status
PROVISIONAL
Organism
Plasmodium falciparum 3D7 (isolate: 3D7)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
Orthologs
all
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Genomic context

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See PF3D7_1325000 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
1
Sequence:
Chromosome: 13; NC_004331.3 (1042855..1043088, complement)

Chromosome 13 - NC_004331.3Genomic Context describing neighboring genes Neighboring gene dihydrofolate synthase/folylpolyglutamate synthase Neighboring gene L-lactate dehydrogenase Neighboring gene phosphoribosylpyrophosphate synthetase Neighboring gene lactate dehydrogenase, putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_004331.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of Plasmodium falciparum nuclear proteins by mass spectrometry and proposed protein annotation. Briquet S, et al. PLoS One, 2018. PMID 30379851, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by GeneDB

Process Evidence Code Pubs
acts_upstream_of_or_within mRNA splicing, via spliceosome ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in nucleus HDA PubMed 
part_of sno(s)RNA-containing ribonucleoprotein complex ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
U6 snRNA-associated Sm-like protein LSm6, putative

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004331.3 Reference assembly

    Range
    1042855..1043088 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001349954.1 → XP_001349990.1  U6 snRNA-associated Sm-like protein LSm6, putative [Plasmodium falciparum 3D7]

    See identical proteins and their annotated locations for XP_001349990.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A024V459, A0A024VF31, A0A024W3Q7, A0A024WLE1, A0A024X3A1, A0A0L1IEH8, A0A0L7K827, A0A0L7M0H0, Q8IE68, W4IBE9, W4IXT9, W7F733, W7FUA0, W7JPF4
    Conserved Domains (1) summary
    cd01726
    Location:5 → 72
    LSm6; Like-Sm protein 6
Nucleotide Protein
Heading Accession and Version

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