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DEA(D/H)-box RNA helicase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814642, updated on 18-Sep-2024

Summary

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Official Full Name
DEA(D/H)-box RNA helicase family protein
Primary source
TAIR:AT2G01130
Locus tag
AT2G01130
See related
Araport:AT2G01130
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F10A8.28
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Genomic context

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Location:
chromosome: 2
Exon count:
19
Sequence:
Chromosome: 2; NC_003071.7 (88320..94753, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Ubiquinol-cytochrome C reductase hinge protein Neighboring gene FAM133-like protein Neighboring gene Sec-independent periplasmic protein translocase Neighboring gene ncRNA Neighboring gene origin recognition complex subunit 4 Neighboring gene Aldolase superfamily protein Neighboring gene tRNA-Asn Neighboring gene RING-H2 finger protein 2B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001335034.1
NM_126175.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DEA(D/H)-box RNA helicase family protein
NP_178223.2
  • DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G48650.2); Has 13137 Blast hits to 8990 proteins in 1526 species: Archae - 10; Bacteria - 5358; Metazoa - 2929; Fungi - 1766; Plants - 978; Viruses - 93; Other Eukaryotes - 2003 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    88320..94753 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126175.4 → NP_178223.2  DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178223.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IM84, Q8S8F6, Q9ZU53
    UniProtKB/TrEMBL
    A0A5S9WW80
    Conserved Domains (3) summary
    COG1643
    Location:213 → 807
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    pfam00035
    Location:1025 → 1087
    dsrm; Double-stranded RNA binding motif
    pfam07717
    Location:837 → 918
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold

  2. NM_001335034.1 → NP_001325246.1  DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B2K8, A0A5S9WW80
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4IM84.1

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