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Ribosomal protein L30/L7 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814652, updated on 10-Oct-2024

Summary

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Official Full Name
Ribosomal protein L30/L7 family protein
Primary source
TAIR:AT2G01250
Locus tag
AT2G01250
See related
Araport:AT2G01250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F10A8.13; F10A8_13
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (132578..134455, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Nucleotidylyl transferase superfamily protein Neighboring gene reticulon-like protein B15 Neighboring gene hypothetical protein (DUF789) Neighboring gene quiescin-sulfhydryl oxidase 2 Neighboring gene RING/FYVE/PHD zinc finger superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular evolutionary analyses of the Arabidopsis L7 ribosomal protein gene family. Barakat A, et al. Gene, 2007 Nov 15. PMID 17889453
  2. Regulation of Active DNA Demethylation by a Methyl-CpG-Binding Domain Protein in Arabidopsis thaliana. Li Q, et al. PLoS Genet, 2015 May. PMID 25933434, Free PMC Article
  3. Identification of proteins that interact with catalytically active calcium-dependent protein kinases from Arabidopsis. Uno Y, et al. Mol Genet Genomics, 2009 Apr. PMID 19130088
  4. The Arabidopsis metacaspase9 degradome. Tsiatsiani L, et al. Plant Cell, 2013 Aug. PMID 23964026, Free PMC Article
  5. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article

See all (23) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The expression of RPL7B in Arabidopsis is reported.
    Title: Molecular evolutionary analyses of the Arabidopsis L7 ribosomal protein gene family.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

NM_001084394.1
NM_126186.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
NOT located_in Golgi apparatus RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in chloroplast HDA PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
part_of cytosolic large ribosomal subunit HDA PubMed 
located_in cytosolic ribosome HDA PubMed 
located_in mitochondrion HDA PubMed 
located_in plant-type cell wall HDA PubMed 
located_in plant-type vacuole HDA PubMed 
located_in vacuole HDA PubMed 

General protein information

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Preferred Names
Ribosomal protein L30/L7 family protein
NP_001077863.1
  • Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, chloroplast, plasma membrane, large ribosomal subunit, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT3G13580.1); Has 1075 Blast hits to 1075 proteins in 310 species: Archae - 55; Bacteria - 0; Metazoa - 442; Fungi - 204; Plants - 182; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
NP_178234.1
  • Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT3G13580.1); Has 1297 Blast hits to 1295 proteins in 388 species: Archae - 210; Bacteria - 1; Metazoa - 453; Fungi - 213; Plants - 195; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    132578..134455 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126186.4 → NP_178234.1  Ribosomal protein L30/L7 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178234.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80581, P60040, Q42208, Q9ZU42
    UniProtKB/TrEMBL
    A0A178VX60, A0A5S9WW98
    Conserved Domains (1) summary
    TIGR01310
    Location:10 → 242
    uL30_euk; 60S ribosomal protein uL30, eukaryotic form

  2. NM_001084394.1 → NP_001077863.1  Ribosomal protein L30/L7 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077863.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8MRH4
    Conserved Domains (2) summary
    cd01657
    Location:83 → 171
    Ribosomal_L7_archeal_euk; Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The ...
    pfam08079
    Location:11 → 81
    Ribosomal_L30_N; Ribosomal L30 N-terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P60040.1

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