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hypothetical protein (DUF789) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814653, updated on 18-Sep-2024

Summary

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Official Full Name
hypothetical protein (DUF789)
Primary source
TAIR:AT2G01260
Locus tag
AT2G01260
See related
Araport:AT2G01260
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F10A8.14; F10A8_14
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (135223..137916, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene reticulon-like protein B15 Neighboring gene Ribosomal protein L30/L7 family protein Neighboring gene quiescin-sulfhydryl oxidase 2 Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

NM_001335046.1
NM_126187.4
NM_201662.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hypothetical protein (DUF789)
NP_001318174.1
  • Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT1G15030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_565257.1
  • Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT1G15030.1); Has 265 Blast hits to 263 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
NP_973391.1
  • Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT1G15030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    135223..137916 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126187.4 → NP_565257.1  hypothetical protein (DUF789) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565257.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VS68, A0A654EQY0, Q9ZU41
    Conserved Domains (1) summary
    pfam05623
    Location:64 → 366
    DUF789; Protein of unknown function (DUF789)

  2. NM_001335046.1 → NP_001318174.1  hypothetical protein (DUF789) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRY3, F4IN81

  3. NM_201662.3 → NP_973391.1  hypothetical protein (DUF789) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973391.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VS68, F4IN82
    Conserved Domains (1) summary
    pfam05623
    Location:64 → 296
    DUF789; Protein of unknown function (DUF789)
Nucleotide Protein
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