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PAHX phytanoyl-CoA dioxygenase (PhyH) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814677, updated on 18-Sep-2024

Summary

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Official Symbol
PAHX
Official Full Name
phytanoyl-CoA dioxygenase (PhyH) family protein
Primary source
TAIR:AT2G01490
Locus tag
AT2G01490
See related
Araport:AT2G01490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2I9.11; F2I9_11; phytanoyl-CoA 2-hydroxylase
Summary
Encodes a phytanoyl-CoA 2-hydroxylase (PAHX).
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Genomic context

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See PAHX in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Sequence:
Chromosome: 2; NC_003071.7 (221013..223809)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene SEC12P-like 2 protein Neighboring gene O-fucosyltransferase family protein Neighboring gene Homeodomain-like superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene CLAVATA3/ESR-RELATED 16

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of a range of catabolic mutants provides evidence that phytanoyl-coenzyme A does not act as a substrate of the electron-transfer flavoprotein/electron-transfer flavoprotein:ubiquinone oxidoreductase complex in Arabidopsis during dark-induced senescence. Araújo WL, et al. Plant Physiol, 2011 Sep. PMID 21788362, Free PMC Article
  2. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
  3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001335065.1
NM_126210.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phytanoyl-CoA dioxygenase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
phytanoyl-CoA dioxygenase (PhyH) family protein
NP_565262.1
  • phytanoyl-CoA dioxygenase (PhyH) family protein; FUNCTIONS IN: phytanoyl-CoA dioxygenase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytanoyl-CoA dioxygenase (InterPro:IPR008775); Has 2926 Blast hits to 2921 proteins in 334 species: Archae - 4; Bacteria - 485; Metazoa - 347; Fungi - 101; Plants - 64; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    221013..223809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126210.4 → NP_565262.1  phytanoyl-CoA dioxygenase (PhyH) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565262.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LA19, Q93Z95, Q9ZVF6
    UniProtKB/TrEMBL
    A0A178VMV8, A0A5S9WWB5
    Conserved Domains (1) summary
    pfam05721
    Location:15 → 251
    PhyH; Phytanoyl-CoA dioxygenase (PhyH)

  2. NM_001335065.1 → NP_001325094.1  phytanoyl-CoA dioxygenase (PhyH) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LA19, Q93Z95, Q9ZVF6
    UniProtKB/TrEMBL
    A0A178VMV8, A0A5S9WWB5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZVF6.2

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