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ribosome biogenesis protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814693, updated on 18-Sep-2024

Summary

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Official Full Name
ribosome biogenesis protein
Primary source
TAIR:AT2G01640
Locus tag
AT2G01640
See related
Araport:AT2G01640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T8O11.19; T8O11_19
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (282830..284598)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RNI-like superfamily protein Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene ncRNA Neighboring gene plant UBX domain-containing protein 2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene plasmodesmata-located protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The nucleolar protein SAHY1 is involved in pre-rRNA processing and normal plant growth. Hsu PJ, et al. Plant Physiol, 2021 Apr 2. PMID 33793900, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001202567.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
  
involved_in rRNA processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in ribosome biogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  
part_of preribosome, small subunit precursor IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ribosome biogenesis protein
NP_001189496.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages.
NP_565270.1
  • unknown protein; Has 51 Blast hits to 51 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    282830..284598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126225.4 → NP_565270.1  ribosome biogenesis protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565270.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VZL7, A0A5S9WWG4, Q9ZU92
    Conserved Domains (1) summary
    pfam15341
    Location:10 → 121
    SLX9; Ribosome biogenesis protein SLX9

  2. NM_001202567.1 → NP_001189496.1  ribosome biogenesis protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189496.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VZL7, A0A5S9WWG4, Q9ZU92
    Conserved Domains (1) summary
    pfam15341
    Location:10 → 121
    SLX9; Ribosome biogenesis protein SLX9
Nucleotide Protein
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