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PUX2 plant UBX domain-containing protein 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814694, updated on 18-Sep-2024

Summary

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Official Symbol
PUX2
Official Full Name
plant UBX domain-containing protein 2
Primary source
TAIR:AT2G01650
Locus tag
AT2G01650
See related
Araport:AT2G01650
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
plant UBX domain-containing protein 2; T8O11.18; T8O11_18
Summary
encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo.
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Genomic context

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See PUX2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (284509..286529, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RNI-like superfamily protein Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene ncRNA Neighboring gene ribosome biogenesis protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene plasmodesmata-located protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Chandran D, et al. Mol Plant Microbe Interact, 2013 May. PMID 23301616
  2. Temporal global expression data reveal known and novel salicylate-impacted processes and regulators mediating powdery mildew growth and reproduction on Arabidopsis. Chandran D, et al. Plant Physiol, 2009 Mar. PMID 19176722, Free PMC Article
  3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001335070.1
NM_001335071.1
NM_126226.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in defense response to fungus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to fungus IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in extrinsic component of membrane NAS
Non-traceable Author Statement
more info
  
located_in mitochondrion HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
plant UBX domain-containing protein 2
NP_001318177.1
  • plant UBX domain-containing protein 2 (PUX2); CONTAINS InterPro DOMAIN/s: PUB domain (InterPro:IPR018997), UBX (InterPro:IPR001012), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT1G04850.1); Has 563 Blast hits to 563 proteins in 115 species: Archae - 0; Bacteria - 15; Metazoa - 269; Fungi - 22; Plants - 176; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    284509..286529 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335070.1 → NP_001318177.1  plant UBX domain-containing protein 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LGE5, Q9ZU93
    UniProtKB/TrEMBL
    A0A178VRF3, A0A5S9WWD5, A0A7G2E4Q6
    Conserved Domains (2) summary
    cd09212
    Location:175 → 264
    PUB; PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins
    cd16119
    Location:354 → 434
    UBX_UBXN6; Ubiquitin regulatory domain X (UBX) found in UBX domain protein 6 (UBXN6) and similar proteins

  2. NM_126226.4 → NP_565271.1  plant UBX domain-containing protein 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565271.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LGE5, Q9ZU93
    UniProtKB/TrEMBL
    A0A178VRF3, A0A5S9WWD5, A0A7G2E4Q6
    Conserved Domains (2) summary
    cd09212
    Location:175 → 264
    PUB; PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins
    cd16119
    Location:354 → 434
    UBX_UBXN6; Ubiquitin regulatory domain X (UBX) found in UBX domain protein 6 (UBXN6) and similar proteins

  3. NM_001335071.1 → NP_001323562.1  plant UBX domain-containing protein 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRF3, A0A1P8AXE7, A0A5S9WWD5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZU93.2

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