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RNA-dependent RNA polymerase-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 815085, updated on 18-Sep-2024

Summary

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Official Full Name
RNA-dependent RNA polymerase-like protein
Primary source
TAIR:AT2G05370
Locus tag
AT2G05370
See related
Araport:AT2G05370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16J10.8; F16J10_8
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (1960413..1961840, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene glycine-rich protein 3 short isoform Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Geminivirus VIGS of endogenous genes requires SGS2/SDE1 and SGS3 and defines a new branch in the genetic pathway for silencing in plants. Muangsan N, et al. Plant J, 2004 Jun. PMID 15165191
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SGS2/SDE1 and SGS3 are needed for endogenous gene silencing from DNA viruses, and suggest that SGS2/SDE1 may reduce geminivirus symptoms by targeting viral mRNAs.
    Title: Geminivirus VIGS of endogenous genes requires SGS2/SDE1 and SGS3 and defines a new branch in the genetic pathway for silencing in plants.
Submit: New GeneRIF Correction

General gene information

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NM_001161024.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA-dependent RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
RNA-dependent RNA polymerase-like protein
NP_001154496.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase 6 (TAIR:AT3G49500.1); Has 31 Blast hits to 31 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_178605.1
  • BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase 6 (TAIR:AT3G49500.1); Has 65 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    1960413..1961840 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126560.1 → NP_178605.1  RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178605.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9SHT7

  2. NM_001161024.1 → NP_001154496.1  RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154496.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q58G28, Q8GUU1
Nucleotide Protein
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