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TLD-domain containing nucleolar protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 815108, updated on 18-Sep-2024

Summary

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Official Full Name
TLD-domain containing nucleolar protein
Primary source
TAIR:AT2G05590
Locus tag
AT2G05590
See related
Araport:AT2G05590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T20G20.6; T20G20_6
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Genomic context

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Location:
chromosome: 2
Exon count:
8
Sequence:
Chromosome: 2; NC_003071.7 (2067061..2069255)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The mitochondrial oxidation resistance protein AtOXR2 increases plant biomass and tolerance to oxidative stress. Colombatti F, et al. J Exp Bot, 2019 Jun 28. PMID 30945737
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_126582.1
NM_179607.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to oxidative stress IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TLD-domain containing nucleolar protein
NP_565326.1
  • TLD-domain containing nucleolar protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: TLD-domain containing nucleolar protein (TAIR:AT4G39870.2); Has 669 Blast hits to 669 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 372; Fungi - 60; Plants - 112; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
NP_849938.1
  • TLD-domain containing nucleolar protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: TLD-domain containing nucleolar protein (TAIR:AT4G39870.2); Has 907 Blast hits to 899 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 481; Fungi - 117; Plants - 118; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    2067061..2069255
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179607.3 → NP_849938.1  TLD-domain containing nucleolar protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849938.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VYP9, Q94A07, Q9AT60
    Conserved Domains (1) summary
    smart00584
    Location:135 → 296
    TLDc; domain in TBC and LysM domain containing proteins

  2. NM_126582.1 → NP_565326.1  TLD-domain containing nucleolar protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565326.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q94A07, Q9SL08
    Conserved Domains (1) summary
    cl02144
    Location:135 → 263
    TLD; TLD
Nucleotide Protein
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