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O-Glycosyl hydrolases family 17 protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 815130, updated on 18-Sep-2024

Summary

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Official Full Name
O-Glycosyl hydrolases family 17 protein
Primary source
TAIR:AT2G05790
Locus tag
AT2G05790
See related
Araport:AT2G05790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T25M19.1; T25M19_1
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (2199151..2201603)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_126593.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glucan endo-1,3-beta-D-glucosidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
O-Glycosyl hydrolases family 17 protein
NP_178637.2
  • O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT5G55180.1); Has 2832 Blast hits to 2751 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 13; Plants - 2801; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    2199151..2201603
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126593.5 → NP_178637.2  O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178637.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VV02, F4IHD3
    Conserved Domains (2) summary
    smart00768
    Location:383 → 468
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:25 → 344
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
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