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PSBX photosystem II subunit X [ Arabidopsis thaliana (thale cress) ]

Gene ID: 815210, updated on 18-Sep-2024

Summary

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Official Symbol
PSBX
Official Full Name
photosystem II subunit X
Primary source
TAIR:AT2G06520
Locus tag
AT2G06520
See related
Araport:AT2G06520
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
photosystem II subunit X; PSII-X; T12H3.7; T12H3_7
Summary
Encodes a protein with sequence similarity to the spinach photosystem II subunit PsbX.
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Genomic context

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See PSBX in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (2587729..2588448, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene hAT family dimerization domain-containing protein Neighboring gene replication protein A 1A Neighboring gene SNF7 family protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Antisense inhibition of the PsbX protein affects PSII integrity in the higher plant Arabidopsis thaliana. García-Cerdán JG, et al. Plant Cell Physiol, 2009 Feb. PMID 19112079
  2. A split-ubiquitin yeast two-hybrid screen to examine the substrate specificity of atToc159 and atToc132, two Arabidopsis chloroplast preprotein import receptors. Dutta S, et al. PLoS One, 2014. PMID 24736607, Free PMC Article
  3. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Friso G, et al. Plant Cell, 2004 Feb. PMID 14729914, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Reduction of PsbX leads to reduced levels of functional assembled PSII core complexes, while the light-harvesting antennae are not affected.
    Title: Antisense inhibition of the PsbX protein affects PSII integrity in the higher plant Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

NM_126649.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast thylakoid membrane HDA PubMed 

General protein information

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Preferred Names
photosystem II subunit X
NP_565335.1
  • photosystem II subunit X (PSBX); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein PsbX (InterPro:IPR009518); Has 63 Blast hits to 63 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    2587729..2588448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126649.3 → NP_565335.1  photosystem II subunit X [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565335.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W0Y5, Q9SKI3
    Conserved Domains (1) summary
    PLN00088
    Location:24 → 115
    PLN00088; predicted protein; Provisional
Nucleotide Protein
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