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[ Arabidopsis thaliana (thale cress) ]

Gene ID: 815398, updated on 22-Aug-2024

Summary

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Primary source
Araport:AT2G07725
Locus tag
AT2G07725
See related
TAIR:AT2G07725
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (3447398..3449059)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene LOW protein: cytochrome C biogenesis ccmF-like protein Neighboring gene tRNA-Gly Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene cytochrome b Neighboring gene tRNA-Ser

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_126761.2

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ribosomal L5P family protein
NP_178803.1
  • Ribosomal L5P family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132), Ribosomal protein L5, N-terminal (InterPro:IPR020927); BEST Arabidopsis thaliana protein match is: ribosomal protein L5 (TAIR:ATMG00210.1); Has 117 Blast hits to 117 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    3447398..3449059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126761.2 → NP_178803.1  Ribosomal L5P family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178803.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U5R7, A7KNJ5, Q6NMS1
    Conserved Domains (1) summary
    CHL00078
    Location:140 → 172
    rpl5; ribosomal protein L5
Nucleotide Protein
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