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3-oxo-5-alpha-steroid 4-dehydrogenase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816152, updated on 18-Sep-2024

Summary

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Official Full Name
3-oxo-5-alpha-steroid 4-dehydrogenase family protein
Primary source
TAIR:AT2G16530
Locus tag
AT2G16530
See related
Araport:AT2G16530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1P15.9; F1P15_9
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (7162931..7165410, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ATPase, F0/V0 complex, subunit C protein Neighboring gene ncRNA Neighboring gene RING/U-box protein with C6HC-type zinc finger protein Neighboring gene maternally expressed family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. POLYPRENOL REDUCTASE2 Deficiency Is Lethal in Arabidopsis Due to Male Sterility. Jozwiak A, et al. Plant Cell, 2015 Dec. PMID 26628744, Free PMC Article
  2. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
  3. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
  4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

NM_001335478.1
NM_001335479.1
NM_001335480.1
NM_127207.4
NM_201745.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 3-oxo-5-alpha-steroid 4-dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
  
enables polyprenol reductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in dolichol-linked oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein N-linked glycosylation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in endoplasmic reticulum HDA PubMed 
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
3-oxo-5-alpha-steroid 4-dehydrogenase family protein
NP_565389.1
  • 3-oxo-5-alpha-steroid 4-dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, 3-oxo-5-alpha-steroid 4-dehydrogenase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104); BEST Arabidopsis thaliana protein match is: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (TAIR:AT1G72590.1); Has 1047 Blast hits to 1045 proteins in 211 species: Archae - 0; Bacteria - 24; Metazoa - 384; Fungi - 161; Plants - 181; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).
NP_973474.1
  • 3-oxo-5-alpha-steroid 4-dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, 3-oxo-5-alpha-steroid 4-dehydrogenase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104); BEST Arabidopsis thaliana protein match is: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (TAIR:AT1G72590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7162931..7165410 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127207.4 → NP_565389.1  3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565389.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q3EBZ6, Q941B4, Q9SI62
    UniProtKB/TrEMBL
    A0A5S9WYG4, A0A654EUV8, A0A7G2E6P0
    Conserved Domains (1) summary
    PLN03164
    Location:21 → 343
    PLN03164; 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional

  2. NM_001335478.1 → NP_001325182.1  3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B2E4, A0A7G2E6P0

  3. NM_001335479.1 → NP_001325183.1  3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q3EBZ6, Q941B4, Q9SI62
    UniProtKB/TrEMBL
    A0A5S9WYG4, A0A654EUV8, A0A7G2E6P0
    Conserved Domains (1) summary
    PLN03164
    Location:21 → 343
    PLN03164; 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional

  4. NM_001335480.1 → NP_001325184.1  3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B2I5, A0A7G2E6P0

  5. NM_201745.2 → NP_973474.1  3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973474.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E6P0
    Conserved Domains (1) summary
    PLN03164
    Location:21 → 342
    PLN03164; 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SI62.2

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