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zinc finger (Ran-binding) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816309, updated on 18-Sep-2024

Summary

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Official Full Name
zinc finger (Ran-binding) family protein
Primary source
TAIR:AT2G17975
Locus tag
AT2G17975
See related
Araport:AT2G17975
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T27K22.20
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (7822074..7824121, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Sec1/munc18-like (SM) proteins superfamily Neighboring gene polyamine-modulated factor 1-binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Novel RNA-Binding Protein Involves ABA Signaling by Post-transcriptionally Repressing ABI2. Xu J, et al. Front Plant Sci, 2017. PMID 28174577, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001335574.1
NM_127353.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within 3'-UTR-mediated mRNA stabilization IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within response to abscisic acid IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
zinc finger (Ran-binding) family protein
NP_179388.1
  • zinc finger (Ran-binding) family protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT2G26695.1); Has 1281 Blast hits to 744 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 342; Fungi - 88; Plants - 606; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7822074..7824121 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127353.3 → NP_179388.1  zinc finger (Ran-binding) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179388.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WYV9, A0A654EV36, Q8S8K1
    Conserved Domains (3) summary
    smart00547
    Location:50 → 74
    ZnF_RBZ; Zinc finger domain
    sd00025
    Location:9 → 28
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:228 → 255
    zf-RanBP; Zn-finger in Ran binding protein and others

  2. NM_001335574.1 → NP_001323512.1  zinc finger (Ran-binding) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AXB9
Nucleotide Protein
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