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HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816921, updated on 18-Sep-2024

Summary

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Official Full Name
HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase
Primary source
TAIR:AT2G23890
Locus tag
AT2G23890
See related
Araport:AT2G23890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T29E15.9; T29E15_9
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Genomic context

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Location:
chromosome: 2
Exon count:
12
Sequence:
Chromosome: 2; NC_003071.7 (10170576..10173945)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene pseudo Neighboring gene Pectin lyase-like superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001335869.1
NM_127950.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase
NP_179967.3
  • HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase; FUNCTIONS IN: 5'-nucleotidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (InterPro:IPR008380), Purine 5'-nucleotidase (InterPro:IPR016695); BEST Arabidopsis thaliana protein match is: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (TAIR:AT1G75210.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10170576..10173945
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335868.1 → NP_001324879.1  HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VR03, A0A1P8B1F7, A0A384KQ93, A0A5S9X0T2

  2. NM_127950.4 → NP_179967.3  HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179967.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9X0T2, A0A654EVI0, Q84MD4
    Conserved Domains (1) summary
    pfam05761
    Location:107 → 543
    5_nucleotid; 5' nucleotidase family

  3. NM_001335869.1 → NP_001324878.1  HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VR85, A0A178VTZ6, A0A1P8B1F9, A0A384L3V1
    Conserved Domains (1) summary
    pfam05761
    Location:17 → 453
    5_nucleotid; 5' nucleotidase family
Nucleotide Protein
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