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RPN13 regulatory particle non-ATPase 13 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817200, updated on 18-Sep-2024

Summary

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Official Symbol
RPN13
Official Full Name
regulatory particle non-ATPase 13
Primary source
TAIR:AT2G26590
Locus tag
AT2G26590
See related
Araport:AT2G26590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
regulatory particle non-ATPase 13; T9J22.26; T9J22_26
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Genomic context

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See RPN13 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Sequence:
Chromosome: 2; NC_003071.7 (11310957..11315524, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827) Neighboring gene plant-specific transcription factor YABBY family protein Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene Transducin family protein / WD-40 repeat family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cross-species divergence of the major recognition pathways of ubiquitylated substrates for ubiquitin/26S proteasome-mediated proteolysis. Fatimababy AS, et al. FEBS J, 2010 Feb. PMID 20059542
  2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036347.2
NM_001036348.2
NM_001336077.1
NM_128216.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
regulatory particle non-ATPase 13
NP_001031424.1
  • regulatory particle non-ATPase 13 (RPN13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell adhesion; LOCATED IN: integral to membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 26S proteasome complex ubiquitin receptor, subunit Rpn13 (InterPro:IPR006773); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001031425.1
  • regulatory particle non-ATPase 13 (RPN13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell adhesion; LOCATED IN: integral to membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 26S proteasome complex ubiquitin receptor, subunit Rpn13 (InterPro:IPR006773); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_565626.1
  • regulatory particle non-ATPase 13 (RPN13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell adhesion; LOCATED IN: integral to membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 26S proteasome complex ubiquitin receptor, subunit Rpn13 (InterPro:IPR006773); Has 502 Blast hits to 414 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 316; Fungi - 61; Plants - 54; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11310957..11315524 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128216.3 → NP_565626.1  regulatory particle non-ATPase 13 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565626.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O48726, Q94JW3
    UniProtKB/TrEMBL
    A0A178VY31, A0A5S9X1N1, A0A7G2EBB2
    Conserved Domains (2) summary
    cd13314
    Location:15 → 118
    PH_Rpn13; Pleckstrin homology-like domain of Regulatory Particle Non-ATPase 13
    pfam16550
    Location:192 → 285
    RPN13_C; UCH-binding domain

  2. NM_001036348.2 → NP_001031425.1  regulatory particle non-ATPase 13 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031425.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O48726, Q94JW3
    UniProtKB/TrEMBL
    A0A178VY31, A0A5S9X1N1, A0A7G2EBB2
    Conserved Domains (2) summary
    cd13314
    Location:15 → 118
    PH_Rpn13; Pleckstrin homology-like domain of Regulatory Particle Non-ATPase 13
    pfam16550
    Location:192 → 285
    RPN13_C; UCH-binding domain

  3. NM_001036347.2 → NP_001031424.1  regulatory particle non-ATPase 13 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031424.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O48726, Q94JW3
    UniProtKB/TrEMBL
    A0A178VY31, A0A5S9X1N1, A0A7G2EBB2
    Conserved Domains (2) summary
    cd13314
    Location:15 → 118
    PH_Rpn13; Pleckstrin homology-like domain of Regulatory Particle Non-ATPase 13
    pfam16550
    Location:192 → 285
    RPN13_C; UCH-binding domain

  4. NM_001336077.1 → NP_001325357.1  regulatory particle non-ATPase 13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B2X5, A0A7G2EBB2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O48726.2

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