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LCR5 low-molecular-weight cysteine-rich 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817383, updated on 18-Sep-2024

Summary

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Official Symbol
LCR5
Official Full Name
low-molecular-weight cysteine-rich 5
Primary source
TAIR:AT2G28355
Locus tag
AT2G28355
See related
Araport:AT2G28355
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
low-molecular-weight cysteine-rich 5
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Genomic context

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See LCR5 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (12119285..12120512)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 13 Neighboring gene auxin response factor 10 Neighboring gene SIT4 phosphatase-associated family protein Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene dsRNA-binding protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

NM_128395.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
low-molecular-weight cysteine-rich 5
NP_565670.1
  • low-molecular-weight cysteine-rich 5 (LCR5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 14 (TAIR:AT2G25344.1); Has 75 Blast hits to 75 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12119285..12120512
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128395.3 → NP_565670.1  low-molecular-weight cysteine-rich 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565670.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P82720, Q8LGD4, Q8S8H3
    UniProtKB/TrEMBL
    A0A178VT26, A0A5S9X1Z1
    Conserved Domains (1) summary
    pfam07333
    Location:33 → 77
    SLR1-BP; S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8S8H3.1

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