U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LAC3 laccase 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817571, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
LAC3
Official Full Name
laccase 3
Primary source
TAIR:AT2G30210
Locus tag
AT2G30210
See related
Araport:AT2G30210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
laccase 3; T9D9.2
Summary
putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LAC3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (12887446..12889931, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene EMBRYO DEFECTIVE 3147 Neighboring gene GDSL-like Lipase/Acylhydrolase family protein Neighboring gene 6,7-dimethyl-8-ribityllumazine synthase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Laccase3-based extracellular domain provides possible positional information for directing Casparian strip formation in Arabidopsis. Zhuang Y, et al. Proc Natl Acad Sci U S A, 2020 Jul 7. PMID 32571955, Free PMC Article
  2. High-order mutants reveal an essential requirement for peroxidases but not laccases in Casparian strip lignification. Rojas-Murcia N, et al. Proc Natl Acad Sci U S A, 2020 Nov 17. PMID 33139576, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197
  4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Laccase3-based extracellular domain provides possible positional information for directing Casparian strip formation in Arabidopsis.
    Title: Laccase3-based extracellular domain provides possible positional information for directing Casparian strip formation in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

NM_128574.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
  
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Casparian strip IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
laccase 3
NP_180580.1
  • laccase 3 (LAC3); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: hypocotyl, fruit, root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 13 (TAIR:AT5G07130.1); Has 11124 Blast hits to 9161 proteins in 1586 species: Archae - 42; Bacteria - 5039; Metazoa - 506; Fungi - 3547; Plants - 1577; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12887446..12889931 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128574.4 → NP_180580.1  laccase 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180580.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22917, Q56YT0
    UniProtKB/TrEMBL
    A0A178W2Q1, A0A5S9X2S3, A0A654EXF1
    Conserved Domains (1) summary
    TIGR03389
    Location:25 → 570
    laccase; plant
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q56YT0.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools