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uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817598, updated on 18-Sep-2024

Summary

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Official Full Name
uncharacterized protein
Primary source
TAIR:AT2G30480
Locus tag
AT2G30480
See related
Araport:AT2G30480
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6B20.25; T6B20_25
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Genomic context

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Location:
chromosome: 2
Exon count:
19
Sequence:
Chromosome: 2; NC_003071.7 (12987051..12993416, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Nucleotide/sugar transporter family protein Neighboring gene B3 domain-containing transcription repressor VAL1 Neighboring gene cinnamate-4-hydroxylase Neighboring gene Kinase interacting (KIP1-like) family protein Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. HEIP1 is required for efficient meiotic crossover implementation and is conserved from plants to humans. Singh DK, et al. Proc Natl Acad Sci U S A, 2023 Jun 6. PMID 37252974, Free PMC Article
  2. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001084512.3
NM_001124946.2
NM_001336262.1
NM_001336263.1
NM_001336264.1
NM_001336265.1
NM_001336266.1
NM_001336269.1
NM_001336270.1
NM_001336271.1
NM_128600.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in DNA recombination IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
uncharacterized protein
NP_001077981.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 189 Blast hits to 180 proteins in 63 species: Archae - 0; Bacteria - 43; Metazoa - 86; Fungi - 6; Plants - 19; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
NP_001118418.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001318320.1
  • unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_180606.2
  • unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12987051..12993416 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336267.1 → NP_001324341.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EGB6, F4INT5, Q0WKV1

  2. NM_001336268.1 → NP_001324342.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AZU1, Q84X11

  3. NM_128600.2 → NP_180606.2  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180606.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5BPS4, Q84X11

  4. NM_001124946.2 → NP_001118418.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118418.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3H6W6

  5. NM_001336270.1 → NP_001324344.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AZT9, A0A7G2EGB6, Q0WKV1

  6. NM_001336269.1 → NP_001324343.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AZT9, A0A7G2EGB6, Q0WKV1

  7. NM_001336262.1 → NP_001324337.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EGB6, F4INT5, Q0WKV1

  8. NM_001084512.3 → NP_001077981.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077981.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EGB6, F4INT5, Q0WKV1

  9. NM_001336271.1 → NP_001324345.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5BPS4, Q84X11

  10. NM_001336263.1 → NP_001324340.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AZT8, Q84X11

  11. NM_001336264.1 → NP_001324338.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3H6W6

  12. NM_001336265.1 → NP_001324339.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EGB6, F4INT8, Q0WKV1

  13. NM_001336266.1 → NP_001318320.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EGB6, F4INT8, Q0WKV1
Nucleotide Protein
Heading Accession and Version

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