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NAC041 NAC domain containing protein 41 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817913, updated on 18-Sep-2024

Summary

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Official Symbol
NAC041
Official Full Name
NAC domain containing protein 41
Primary source
TAIR:AT2G33480
Locus tag
AT2G33480
See related
Araport:AT2G33480
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ANAC041; F4P9.25; F4P9_25; NAC domain containing protein 41
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Genomic context

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See NAC041 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (14180978..14182439)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Ribosomal L28 family Neighboring gene ROP-interactive CRIB motif-containing protein 1 Neighboring gene glycolipid transfer protein 1 Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene B-box type zinc finger protein with CCT domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcription factors that directly regulate the expression of CSLA9 encoding mannan synthase in Arabidopsis thaliana. Kim WC, et al. Plant Mol Biol, 2014 Mar. PMID 24243147
  2. VND-INTERACTING2, a NAC domain transcription factor, negatively regulates xylem vessel formation in Arabidopsis. Yamaguchi M, et al. Plant Cell, 2010 Apr. PMID 20388856, Free PMC Article
  3. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
  4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data indicate that transcription factors ANAC041, bZIP1 and MYB46 directly regulate the expression of CSLA9.
    Title: Transcription factors that directly regulate the expression of CSLA9 encoding mannan synthase in Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001124963.1
NM_001336455.1
NM_128908.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
NAC domain containing protein 41
NP_001118435.1
  • NAC domain containing protein 41 (NAC041); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 83 (TAIR:AT5G13180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_180906.1
  • NAC domain containing protein 41 (NAC041); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 83 (TAIR:AT5G13180.1); Has 3047 Blast hits to 3036 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 3023; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14180978..14182439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128908.5 → NP_180906.1  NAC domain containing protein 41 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180906.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22798
    UniProtKB/TrEMBL
    A0A178VTD8, A0A5S9X3P0, A0A654EYG6
    Conserved Domains (1) summary
    pfam02365
    Location:16 → 137
    NAM; No apical meristem (NAM) protein

  2. NM_001336455.1 → NP_001324909.1  NAC domain containing protein 41 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B1M0
    Conserved Domains (1) summary
    pfam02365
    Location:55 → 80
    NAM; No apical meristem (NAM) protein

  3. NM_001124963.1 → NP_001118435.1  NAC domain containing protein 41 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118435.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EYG6, B3H636
    Conserved Domains (1) summary
    pfam02365
    Location:18 → 59
    NAM; No apical meristem (NAM) protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O22798.1

Gene LinkOut

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