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hydroxyproline-rich glycoprotein family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817914, updated on 18-Sep-2024

Summary

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Official Full Name
hydroxyproline-rich glycoprotein family protein
Primary source
TAIR:AT2G33490
Locus tag
AT2G33490
See related
Araport:AT2G33490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F4P9.26; F4P9_26
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Genomic context

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Location:
chromosome: 2
Exon count:
11
Sequence:
Chromosome: 2; NC_003071.7 (14183263..14188105)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene glycolipid transfer protein 1 Neighboring gene NAC domain containing protein 41 Neighboring gene B-box type zinc finger protein with CCT domain-containing protein Neighboring gene ncRNA Neighboring gene ATP-dependent RNA helicase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001336456.1
NM_001336457.1
NM_001336458.1
NM_128909.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hydroxyproline-rich glycoprotein family protein
NP_180907.2
  • hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G26910.1); Has 1387 Blast hits to 1097 proteins in 177 species: Archae - 4; Bacteria - 37; Metazoa - 593; Fungi - 281; Plants - 163; Viruses - 19; Other Eukaryotes - 290 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14183263..14188105
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128909.3 → NP_180907.2  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180907.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22799
    UniProtKB/TrEMBL
    A0A5S9X3N4
    Conserved Domains (2) summary
    cd07307
    Location:27 → 226
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    PHA03247
    Location:454 → 609
    PHA03247; large tegument protein UL36; Provisional

  2. NM_001336456.1 → NP_001323890.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22799
    UniProtKB/TrEMBL
    A0A5S9X3N4
    Conserved Domains (2) summary
    cd07307
    Location:27 → 226
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    PHA03247
    Location:454 → 609
    PHA03247; large tegument protein UL36; Provisional

  3. NM_001336457.1 → NP_001323891.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AYF9, A0A5S9X3N4

  4. NM_001336458.1 → NP_001323889.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VNE8, A0A1P8AYF0
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O22799.2

Gene LinkOut

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