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scpl46 serine carboxypeptidase-like 46 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817918, updated on 18-Sep-2024

Summary

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Official Symbol
scpl46
Official Full Name
serine carboxypeptidase-like 46
Primary source
TAIR:AT2G33530
Locus tag
AT2G33530
See related
Araport:AT2G33530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F4P9.30; F4P9_30; serine carboxypeptidase-like 46
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Genomic context

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See scpl46 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Sequence:
Chromosome: 2; NC_003071.7 (14197646..14200674, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ATP-dependent RNA helicase Neighboring gene cysteine-rich/transmembrane domain protein A Neighboring gene C-terminal domain phosphatase-like 3 Neighboring gene Homeodomain-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
  2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_179881.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables serine-type carboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
serine carboxypeptidase-like 46
NP_850212.1
  • serine carboxypeptidase-like 46 (scpl46); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 45 (TAIR:AT1G28110.2); Has 3657 Blast hits to 3595 proteins in 428 species: Archae - 0; Bacteria - 306; Metazoa - 635; Fungi - 851; Plants - 1456; Viruses - 0; Other Eukaryotes - 409 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14197646..14200674 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179881.4 → NP_850212.1  serine carboxypeptidase-like 46 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850212.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22803, Q8VY01
    UniProtKB/TrEMBL
    A0A178W062
    Conserved Domains (1) summary
    pfam00450
    Location:38 → 458
    Peptidase_S10; Serine carboxypeptidase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VY01.1

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