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[ Arabidopsis thaliana (thale cress) ]

Gene ID: 817991, updated on 22-Aug-2024

Summary

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Primary source
Araport:AT2G34300
Locus tag
AT2G34300
See related
TAIR:AT2G34300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13P17.14; F13P17_14
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Genomic context

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Location:
chromosome: 2
Exon count:
9
Sequence:
Chromosome: 2; NC_003071.7 (14473651..14477520, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein Neighboring gene avirulence induced family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Label-free protein quantification for plant Golgi protein localization and abundance. Nikolovski N, et al. Plant Physiol, 2014 Oct. PMID 25122472, Free PMC Article
  2. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
  3. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
  4. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
  5. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001036400.2
NM_001336501.1
NM_128981.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in Golgi medial cisterna HDA PubMed 
located_in endoplasmic reticulum HDA PubMed 
located_in endosome HDA PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 
located_in trans-Golgi network HDA PubMed 

General protein information

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Preferred Names
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NP_001031477.1
  • S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G29470.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_180977.1
  • S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G29470.2); Has 54799 Blast hits to 24520 proteins in 1584 species: Archae - 172; Bacteria - 14723; Metazoa - 14369; Fungi - 4484; Plants - 2850; Viruses - 543; Other Eukaryotes - 17658 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14473651..14477520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128981.4 → NP_180977.1  S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80779, Q0WT31
    UniProtKB/TrEMBL
    A0A178VZB0, A0A5S9X3T8, A0A7G2EB72
    Conserved Domains (2) summary
    TIGR00927
    Location:56 → 241
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam03141
    Location:250 → 754
    Methyltransf_29; Putative S-adenosyl-L-methionine-dependent methyltransferase

  2. NM_001336501.1 → NP_001324716.1  S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80779, Q0WT31
    UniProtKB/TrEMBL
    A0A178VZB0, A0A5S9X3T8, A0A7G2EB72
    Conserved Domains (2) summary
    TIGR00927
    Location:56 → 241
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam03141
    Location:250 → 754
    Methyltransf_29; Putative S-adenosyl-L-methionine-dependent methyltransferase

  3. NM_001036400.2 → NP_001031477.1  S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80779, Q0WT31
    UniProtKB/TrEMBL
    A0A178VZB0, A0A5S9X3T8, A0A7G2EB72
    Conserved Domains (2) summary
    TIGR00927
    Location:56 → 241
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam03141
    Location:250 → 754
    Methyltransf_29; Putative S-adenosyl-L-methionine-dependent methyltransferase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0WT31.2

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