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LHB1B1 light-harvesting chlorophyll-protein complex II subunit B1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818006, updated on 18-Sep-2024

Summary

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Official Symbol
LHB1B1
Official Full Name
light-harvesting chlorophyll-protein complex II subunit B1
Primary source
TAIR:AT2G34430
Locus tag
AT2G34430
See related
Araport:AT2G34430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13P17.29; LHCB1.4; light-harvesting chlorophyll-protein complex II subunit B1; LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX II SUBUNIT B1
Summary
Photosystem II type I chlorophyll a/b-binding protein
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Genomic context

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See LHB1B1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (14524607..14525918)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene O-acetyltransferase family protein Neighboring gene ncRNA Neighboring gene photosystem II light harvesting complex protein B1B2 Neighboring gene HMG-box (high mobility group) DNA-binding family protein Neighboring gene AGAMOUS-like 29 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene urease accessory protein G

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence of the fourth and fifth Photosystem II type I chlorophyll a/b-binding protein genes of Arabidopsis thaliana and evidence for the presence of a full complement of the extended CAB gene family. McGrath JM, et al. Plant Mol Biol, 1992 Aug. PMID 1643279
  2. Molecular characterization of the cold- and heat-induced Arabidopsis PXL1 gene and its potential role in transduction pathways under temperature fluctuations. Jung CG, et al. J Plant Physiol, 2015 Mar 15. PMID 25602612
  3. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article
  4. A split-ubiquitin yeast two-hybrid screen to examine the substrate specificity of atToc159 and atToc132, two Arabidopsis chloroplast preprotein import receptors. Dutta S, et al. PLoS One, 2014. PMID 24736607, Free PMC Article
  5. Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. Ferro M, et al. Mol Cell Proteomics, 2003 May. PMID 12766230

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_128995.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables chlorophyll binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables chlorophyll binding TAS
Traceable Author Statement
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within photosynthesis ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
involved_in photosynthesis, light harvesting IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within photosynthesis, light harvesting in photosystem II TAS
Traceable Author Statement
more info
  
Component Evidence Code Pubs
NOT located_in Golgi apparatus RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in chloroplast thylakoid HDA PubMed 
located_in chloroplast thylakoid membrane HDA PubMed 
located_in endoplasmic reticulum HDA PubMed 
located_in thylakoid HDA PubMed 
located_in thylakoid membrane TAS
Traceable Author Statement
more info
  

General protein information

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Preferred Names
light-harvesting chlorophyll-protein complex II subunit B1
NP_565787.1
  • light-harvesting chlorophyll-protein complex II subunit B1 (LHB1B1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem II, photosynthesis; LOCATED IN: in 8 components; EXPRESSED IN: shoot, cotyledon, guard cell, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 1 (TAIR:AT1G29930.1); Has 2425 Blast hits to 2344 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2094; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14524607..14525918
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128995.3 → NP_565787.1  light-harvesting chlorophyll-protein complex II subunit B1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565787.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VW93, A0A654EYS2, Q39142, Q8LCZ4
    Conserved Domains (1) summary
    PLN00025
    Location:5 → 266
    PLN00025; photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Nucleotide Protein
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