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WTF9 Ubiquitin carboxyl-terminal hydrolase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818498, updated on 18-Sep-2024

Summary

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Official Symbol
WTF9
Official Full Name
Ubiquitin carboxyl-terminal hydrolase family protein
Primary source
TAIR:AT2G39120
Locus tag
AT2G39120
See related
Araport:AT2G39120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T7F6.29; T7F6_29; what's this factor 9
Summary
Encodes a mitochondrial protein essential for the splicing of group II introns in two mitochondrial genes for which splicing factors had not previously been identified: rpl2 and ccmFc.
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Genomic context

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See WTF9 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (16321721..16322957)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat (TPR)-containing protein Neighboring gene RING/U-box superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene ncRNA Neighboring gene pseudouridine synthase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A PORR domain protein required for rpl2 and ccmF(C) intron splicing and for the biogenesis of c-type cytochromes in Arabidopsis mitochondria. Francs-Small CC, et al. Plant J, 2012 Mar. PMID 22060106
  2. Mitochondrial Heat Shock Protein 60s Interact with What's This Factor 9 to Regulate RNA Splicing of ccmFC and rpl2. Hsu YW, et al. Plant Cell Physiol, 2019 Jan 1. PMID 30289547
  3. In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Narsai R, et al. Plant Physiol, 2011 Nov. PMID 21908688, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. HSP60s interacted with WTF9, which was further confirmed by a pull-down assay.
    Title: Mitochondrial Heat Shock Protein 60s Interact with What's This Factor 9 to Regulate RNA Splicing of ccmFC and rpl2.
  2. WTF9 is essential for the splicing of group II introns in two mitochondrial genes rpl2 and ccmF(C). Loss of ccmF(C) expression correlates with the loss of cytochromes c and c, confirming a role for ccmF(C) in cytochrome biogenesis. [WTF9]
    Title: A PORR domain protein required for rpl2 and ccmF(C) intron splicing and for the biogenesis of c-type cytochromes in Arabidopsis mitochondria.
  3. WTF9 is required for normal plant growth and development.
    Title: A PORR domain protein required for rpl2 and ccmF(C) intron splicing and for the biogenesis of c-type cytochromes in Arabidopsis mitochondria.
Submit: New GeneRIF Correction

General gene information

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NM_129469.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within Group II intron splicing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cytochrome complex assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Ubiquitin carboxyl-terminal hydrolase family protein
NP_181445.1
  • Ubiquitin carboxyl-terminal hydrolase family protein; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT3G58520.1); Has 404 Blast hits to 398 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 404; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16321721..16322957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129469.2 → NP_181445.1  Ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181445.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZUZ6
    UniProtKB/TrEMBL
    A0A178VL86, A0A5S9X5A6
    Conserved Domains (1) summary
    pfam11955
    Location:32 → 360
    PORR; Plant organelle RNA recognition domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZUZ6.1

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