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RNA polymerase I specific transcription initiation factor RRN3 protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818509, updated on 18-Sep-2024

Summary

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Official Full Name
RNA polymerase I specific transcription initiation factor RRN3 protein
Primary source
TAIR:AT2G39240
Locus tag
AT2G39240
See related
Araport:AT2G39240
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T16B24.12; T16B24_12
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Genomic context

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Location:
chromosome: 2
Exon count:
15
Sequence:
Chromosome: 2; NC_003071.7 (16384786..16388502, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene LATERAL ORGAN JUNCTION Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene regulator of nonsense transcripts UPF2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA polymerase I general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase I promoter IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA polymerase I specific transcription initiation factor RRN3 protein
NP_181457.2
  • RNA polymerase I specific transcription initiation factor RRN3 protein; FUNCTIONS IN: RNA polymerase I transcription factor activity, binding; CONTAINS InterPro DOMAIN/s: RNA polymerase I specific transcription initiation factor RRN3 (InterPro:IPR007991), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RNA polymerase I specific transcription initiation factor RRN3 protein (TAIR:AT2G34750.1); Has 362 Blast hits to 352 proteins in 169 species: Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 131; Plants - 65; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16384786..16388502 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336761.1 → NP_001324384.1  RNA polymerase I specific transcription initiation factor RRN3 protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VWV2, Q1PEV9

  2. NM_129482.3 → NP_181457.2  RNA polymerase I specific transcription initiation factor RRN3 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181457.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VWV2, Q1PEV9
Nucleotide Protein
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