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Basic-leucine zipper (bZIP) transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818657, updated on 18-Sep-2024

Summary

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Official Full Name
Basic-leucine zipper (bZIP) transcription factor family protein
Primary source
TAIR:AT2G40620
Locus tag
AT2G40620
See related
Araport:AT2G40620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
basic leucine-zipper 18; bZIP18; T2P4.3; T2P4_3
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Genomic context

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Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (16954418..16957183, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene appr-1-p processing enzyme family protein Neighboring gene expansin A8 Neighboring gene Uncharacterized conserved protein (UCP030365) Neighboring gene RING/U-box superfamily protein Neighboring gene PRP38 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis bZIP18 and bZIP52 Accumulate in Nuclei Following Heat Stress where They Regulate the Expression of a Similar Set of Genes. Wiese AJ, et al. Int J Mol Sci, 2021 Jan 7. PMID 33430325, Free PMC Article
  2. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Gibalová A, et al. Plant Reprod, 2017 Mar. PMID 27896439
  3. A novel family of plant nuclear envelope-associated proteins. Pawar V, et al. J Exp Bot, 2016 Oct. PMID 27630107
  4. bZIP transcription factors in Arabidopsis. Jakoby M, et al. Trends Plant Sci, 2002 Mar. PMID 11906833
  5. Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. Sparks EE, et al. Dev Cell, 2016 Dec 5. PMID 27923776, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_129624.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables chromatin DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in perinuclear region of cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Basic-leucine zipper (bZIP) transcription factor family protein
NP_181594.1
  • Basic-leucine zipper (bZIP) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G31370.5); Has 1748 Blast hits to 1720 proteins in 178 species: Archae - 0; Bacteria - 19; Metazoa - 312; Fungi - 66; Plants - 1196; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16954418..16957183 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129624.5 → NP_181594.1  Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181594.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22873, O23726
    UniProtKB/TrEMBL
    A0A178VZR1, A0A5S9X5S2
    Conserved Domains (2) summary
    COG1196
    Location:124 → 247
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd14703
    Location:151 → 200
    bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O22873.1

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