Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Cyclin/Brf1-like TBP-binding protein
Primary source: TAIR:AT2G45100
Locus tag: AT2G45100
See related: Araport:AT2G45100
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T14P1.9
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 15

Sequence:: Chromosome: 2; NC_003071.7 (18595178..18598481, complement)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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NM_001337114.1

Supported by ESTs:

NM_001337115.1

Supported by ESTs:

NM_130073.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables TBP-class protein binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within microgametogenesis	IGI Inferred from Genetic Interaction more info	PubMed
involved_in transcription preinitiation complex assembly	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Cyclin/Brf1-like TBP-binding protein

NP_182035.2

Cyclin/Brf1-like TBP-binding protein; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription regulator activity, transcription activator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670), Brf1-like TBP-binding (InterPro:IPR011665); BEST Arabidopsis thaliana protein match is: Cyclin/Brf1-like TBP-binding protein (TAIR:AT3G09360.1); Has 2756 Blast hits to 2323 proteins in 394 species: Archae - 462; Bacteria - 31; Metazoa - 731; Fungi - 345; Plants - 127; Viruses - 25; Other Eukaryotes - 1035 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

18595178..18598481 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_130073.3 → NP_182035.2 Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_182035.2

Status: REVIEWED

UniProtKB/TrEMBL

A0A654F3E3, F4IW19

Conserved Domains (3) summary

COG1405
Location:63 → 259

SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]

pfam07741
Location:375 → 479

BRF1; Brf1-like TBP-binding domain

cl00050
Location:83 → 151

CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
NM_001337114.1 → NP_001324772.1 Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A654F3E3, F4IW19

Conserved Domains (3) summary

COG1405
Location:63 → 259

SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]

pfam07741
Location:375 → 479

BRF1; Brf1-like TBP-binding domain

cl00050
Location:83 → 151

CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
NM_001337115.1 → NP_001324771.1 Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A654F3E3, F4IW19

Conserved Domains (3) summary

COG1405
Location:63 → 259

SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]

pfam07741
Location:375 → 479

BRF1; Brf1-like TBP-binding domain

cl00050
Location:83 → 151

CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...