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SPX3 SPX domain protein 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819120, updated on 18-Sep-2024

Summary

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Official Symbol
SPX3
Official Full Name
SPX domain protein 3
Primary source
TAIR:AT2G45130
Locus tag
AT2G45130
See related
Araport:AT2G45130
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA SPX DOMAIN GENE 3; ATSPX3; SPX domain gene 3; T14P1.6
Summary
Expression is upregulated in the shoot of cax1/cax3 mutant.
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Genomic context

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See SPX3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (18606410..18607853)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene expansin B4 Neighboring gene C2H2-like zinc finger protein Neighboring gene RING/U-box superfamily protein Neighboring gene plant VAP homolog 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the AtSPX3 Promoter Elucidates its Complex Regulation in Response to Phosphorus Deficiency. Li Y, et al. Plant Cell Physiol, 2016 Aug. PMID 27382128
  2. Characterization of a sub-family of Arabidopsis genes with the SPX domain reveals their diverse functions in plant tolerance to phosphorus starvation. Duan K, et al. Plant J, 2008 Jun. PMID 18315545
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_130076.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to phosphate starvation IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within positive regulation of cellular response to phosphate starvation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SPX domain protein 3
NP_182038.1
  • SPX domain gene 3 (SPX3); CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX domain gene 1 (TAIR:AT5G20150.1); Has 942 Blast hits to 942 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 232; Fungi - 375; Plants - 276; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    18606410..18607853
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_130076.2 → NP_182038.1  SPX domain protein 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_182038.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5PP62
    UniProtKB/TrEMBL
    A0A654F3B8
    Conserved Domains (2) summary
    cd14481
    Location:2 → 131
    SPX_AtSPX1_like; SPX domain of the plant protein SPX1 and similar proteins
    pfam03105
    Location:3 → 143
    SPX; SPX domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5PP62.1

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