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GC4 golgin Putative 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819225, updated on 18-Sep-2024

Summary

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Official Symbol
GC4
Official Full Name
golgin Putative 4
Primary source
TAIR:AT2G46180
Locus tag
AT2G46180
See related
Araport:AT2G46180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
golgin candidate 4; T3F17.17
Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC4 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (169 aa) portion of the protein.
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Genomic context

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See GC4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
15
Sequence:
Chromosome: 2; NC_003071.7 (18967269..18971409, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene RING/U-box superfamily protein Neighboring gene Reticulon family protein Neighboring gene Mitochondrial glycoprotein family protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Localization and domain characterization of Arabidopsis golgin candidates. Latijnhouwers M, et al. J Exp Bot, 2007. PMID 18182439
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

NM_180116.2

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within Golgi organization ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
golgin Putative 4
NP_850447.1
  • golgin candidate 4 (GC4); BEST Arabidopsis thaliana protein match is: GRIP-related ARF-binding domain-containing protein 1 (TAIR:AT3G61570.1); Has 144775 Blast hits to 78736 proteins in 3164 species: Archae - 1753; Bacteria - 23936; Metazoa - 62600; Fungi - 12453; Plants - 7734; Viruses - 519; Other Eukaryotes - 35780 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    18967269..18971409 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180116.2 → NP_850447.1  golgin Putative 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850447.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O82351, Q8VYU6
    UniProtKB/TrEMBL
    A0A5S9X7E7, A0A7G2EGN6
    Conserved Domains (1) summary
    COG1196
    Location:163 → 561
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VYU6.1

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