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ABIL1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819230, updated on 22-Aug-2024

Summary

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Official Symbol
ABIL1
Primary source
Araport:AT2G46225
Locus tag
AT2G46225
See related
TAIR:AT2G46225
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ABI-1-like 1
Summary
Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. One of four ABI-like proteins.
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Genomic context

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See ABIL1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Sequence:
Chromosome: 2; NC_003071.7 (18981911..18984292)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene U11/U12 small nuclear ribonucleoprotein Neighboring gene Fatty acid/sphingolipid desaturase Neighboring gene DUF2358 family protein (DUF2358) Neighboring gene ncRNA Neighboring gene PIN domain-like family protein Neighboring gene BCL-2-associated athanogene 6 Neighboring gene myosin heavy chain-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. DISTORTED3/SCAR2 is a putative arabidopsis WAVE complex subunit that activates the Arp2/3 complex and is required for epidermal morphogenesis. Basu D, et al. Plant Cell, 2005 Feb. PMID 15659634, Free PMC Article
  2. Breaking the WAVE complex: the point of Arabidopsis trichomes. Szymanski DB. Curr Opin Plant Biol, 2005 Feb. PMID 15653407
  3. The role of Arabidopsis SCAR genes in ARP2-ARP3-dependent cell morphogenesis. Uhrig JF, et al. Development, 2007 Mar. PMID 17267444
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001125062.1
NM_001202827.1
NM_130185.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within actin nucleation TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within trichome morphogenesis TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of SCAR complex TAS
Traceable Author Statement
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ABI-1-like 1
NP_001118534.1
  • ABI-1-like 1 (ABIL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: actin nucleation, trichome morphogenesis; LOCATED IN: SCAR complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ABL interactor-like protein 3 (TAIR:AT5G24310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001189756.1
  • ABI-1-like 1 (ABIL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: actin nucleation, trichome morphogenesis; LOCATED IN: SCAR complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ABL interactor-like protein 3 (TAIR:AT5G24310.1).
NP_566067.1
  • ABI-1-like 1 (ABIL1); BEST Arabidopsis thaliana protein match is: ABL interactor-like protein 3 (TAIR:AT5G24310.1); Has 541 Blast hits to 541 proteins in 65 species: Archae - 0; Bacteria - 4; Metazoa - 369; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    18981911..18984292
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001202827.1 → NP_001189756.1  ABI-1-like 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4II55

  2. NM_001125062.1 → NP_001118534.1  ABI-1-like 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3H5V3

  3. NM_130185.3 → NP_566067.1  ABI-1-like 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GWF6, Q8S8M5
    UniProtKB/TrEMBL
    A0A178VQI3, A0A384LLB1, Q1EC71
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8S8M5.1

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