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LAC6 laccase 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819269, updated on 18-Sep-2024

Summary

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Official Symbol
LAC6
Official Full Name
laccase 6
Primary source
TAIR:AT2G46570
Locus tag
AT2G46570
See related
Araport:AT2G46570
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13A10.10; laccase 6
Summary
putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).
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Genomic context

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See LAC6 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (19126272..19129069)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Pyridoxamine 5'-phosphate oxidase family protein Neighboring gene Dof-type zinc finger DNA-binding family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
  
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
laccase 6
NP_182180.1
  • laccase 6 (LAC6); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: shoot, hypocotyl, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 9565 Blast hits to 7786 proteins in 1266 species: Archae - 28; Bacteria - 3648; Metazoa - 481; Fungi - 3482; Plants - 1556; Viruses - 0; Other Eukaryotes - 370 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    19126272..19129069
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_130222.2 → NP_182180.1  laccase 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_182180.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RY28, Q9ZPY2
    UniProtKB/TrEMBL
    A0A5S9X814, A0A654FD18
    Conserved Domains (4) summary
    cd13849
    Location:34 → 150
    CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
    cd13875
    Location:165 → 312
    CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
    cd13897
    Location:413 → 552
    CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
    TIGR03389
    Location:29 → 569
    laccase; laccase, plant

  2. NM_001337204.1 → NP_001324819.1  laccase 6 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B1C0, A0A5S9X814, A0A654FD18
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZPY2.1

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