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PAS_chr1-3_0022 Transportin, cytosolic karyopherin beta 2 [ Komagataella phaffii GS115 ]

Gene ID: 8197955, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr1-3_0022
Gene description
Transportin, cytosolic karyopherin beta 2
Locus tag
PAS_chr1-3_0022
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr1-3_0022 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_012963.1 (39526..42300)

Chromosome 1 - NC_012963.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Allantoinase, converts allantoin to allantoate in the first step of allantoin degradation Neighboring gene Succinate semialdehyde dehydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012963.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear import signal receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear localization sequence binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Transportin, cytosolic karyopherin beta 2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012963.1 Reference assembly

    Range
    39526..42300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002489313.1 → XP_002489358.1  Transportin, cytosolic karyopherin beta 2 [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002489358.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4QV04, F2QLA9
    Conserved Domains (2) summary
    COG5215
    Location:15 → 700
    KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
    sd00044
    Location:409 → 437
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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