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PAS_chr1-3_0023 Allantoinase, converts allantoin to allantoate in the first step of allantoin degradation [ Komagataella phaffii GS115 ]

Gene ID: 8197956, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr1-3_0023
Gene description
Allantoinase, converts allantoin to allantoate in the first step of allantoin degradation
Locus tag
PAS_chr1-3_0023
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr1-3_0023 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_012963.1 (42367..44352, complement)

Chromosome 1 - NC_012963.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Transportin, cytosolic karyopherin beta 2 Neighboring gene Succinate semialdehyde dehydrogenase Neighboring gene Protein that stimulates strand exchange by stabilizing the binding of Rad51p to single-stranded DNA Neighboring gene Negative regulator of RNA polymerase III

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012963.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables allantoinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in purine nucleobase catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Allantoinase, converts allantoin to allantoate in the first step of allantoin degradation

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012963.1 Reference assembly

    Range
    42367..44352 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002489314.1 → XP_002489359.1  Allantoinase, converts allantoin to allantoate in the first step of allantoin degradation [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002489359.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4QV05, F2QLB0
    Conserved Domains (1) summary
    cl00281
    Location:5 → 656
    metallo-dependent_hydrolases; Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a ...
Nucleotide Protein
Heading Accession and Version

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