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PAS_chr1-3_0025 Protein that stimulates strand exchange by stabilizing the binding of Rad51p to single-stranded DNA [ Komagataella phaffii GS115 ]

Gene ID: 8197958, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr1-3_0025
Gene description
Protein that stimulates strand exchange by stabilizing the binding of Rad51p to single-stranded DNA
Locus tag
PAS_chr1-3_0025
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr1-3_0025 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_012963.1 (47056..48600)

Chromosome 1 - NC_012963.1Genomic Context describing neighboring genes Neighboring gene Allantoinase, converts allantoin to allantoate in the first step of allantoin degradation Neighboring gene Succinate semialdehyde dehydrogenase Neighboring gene Negative regulator of RNA polymerase III Neighboring gene uncharacterized protein Neighboring gene Cytoplasmic inorganic pyrophosphatase (PPase)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012963.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA strand exchange activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA recombinase assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA strand invasion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein that stimulates strand exchange by stabilizing the binding of Rad51p to single-stranded DNA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012963.1 Reference assembly

    Range
    47056..48600
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002489316.1 → XP_002489361.1  Protein that stimulates strand exchange by stabilizing the binding of Rad51p to single-stranded DNA [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002489361.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1G4KNY4, C4QV07
    Conserved Domains (1) summary
    cl28885
    Location:101 → 306
    RecA-like_NTPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and ...
Nucleotide Protein
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