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PAS_chr1-3_0028 Cytoplasmic inorganic pyrophosphatase (PPase) [ Komagataella phaffii GS115 ]

Gene ID: 8197961, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr1-3_0028
Gene description
Cytoplasmic inorganic pyrophosphatase (PPase)
Locus tag
PAS_chr1-3_0028
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr1-3_0028 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_012963.1 (53292..54152)

Chromosome 1 - NC_012963.1Genomic Context describing neighboring genes Neighboring gene Protein that stimulates strand exchange by stabilizing the binding of Rad51p to single-stranded DNA Neighboring gene Negative regulator of RNA polymerase III Neighboring gene uncharacterized protein Neighboring gene Phosphoribosylanthranilate isomerase that catalyzes the third step in tryptophan biosynthesis Neighboring gene Subunit of heteropentameric Replication factor C (RF-C)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012963.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inorganic diphosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphate-containing compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Cytoplasmic inorganic pyrophosphatase (PPase)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012963.1 Reference assembly

    Range
    53292..54152
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002489319.1 → XP_002489364.1  Cytoplasmic inorganic pyrophosphatase (PPase) [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002489364.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4QV10, F2QLB5
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials