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PAS_chr1-3_0030 Subunit of heteropentameric Replication factor C (RF-C) [ Komagataella phaffii GS115 ]

Gene ID: 8197963, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr1-3_0030
Gene description
Subunit of heteropentameric Replication factor C (RF-C)
Locus tag
PAS_chr1-3_0030
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr1-3_0030 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_012963.1 (55032..56006)

Chromosome 1 - NC_012963.1Genomic Context describing neighboring genes Neighboring gene Cytoplasmic inorganic pyrophosphatase (PPase) Neighboring gene Phosphoribosylanthranilate isomerase that catalyzes the third step in tryptophan biosynthesis Neighboring gene Component of the GARP (Golgi-associated retrograde protein) complex Neighboring gene EH domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012963.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA clamp loader activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA-templated DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Ctf18 RFC-like complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of DNA replication factor C complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of Elg1 RFC-like complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of Rad17 RFC-like complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Subunit of heteropentameric Replication factor C (RF-C)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012963.1 Reference assembly

    Range
    55032..56006
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002489321.1 → XP_002489366.1  Subunit of heteropentameric Replication factor C (RF-C) [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002489366.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4QV12, F2QLB7
    Conserved Domains (1) summary
    cl25702
    Location:9 → 319
    Rad17; Rad17 cell cycle checkpoint protein
Nucleotide Protein
Heading Accession and Version

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