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PAS_chr1-3_0031 Component of the GARP (Golgi-associated retrograde protein) complex [ Komagataella phaffii GS115 ]

Gene ID: 8197964, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr1-3_0031
Gene description
Component of the GARP (Golgi-associated retrograde protein) complex
Locus tag
PAS_chr1-3_0031
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr1-3_0031 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_012963.1 (56117..57874)

Chromosome 1 - NC_012963.1Genomic Context describing neighboring genes Neighboring gene Phosphoribosylanthranilate isomerase that catalyzes the third step in tryptophan biosynthesis Neighboring gene Subunit of heteropentameric Replication factor C (RF-C) Neighboring gene EH domain-containing protein Neighboring gene Nuclear SAM-dependent mono-and asymmetric arginine dimethylating methyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012963.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables syntaxin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi to vacuole transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endocytic recycling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of GARP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Component of the GARP (Golgi-associated retrograde protein) complex

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012963.1 Reference assembly

    Range
    56117..57874
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002489322.1 → XP_002489367.1  Component of the GARP (Golgi-associated retrograde protein) complex [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002489367.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4QV13, F2QLB8
    Conserved Domains (1) summary
    cl19950
    Location:82 → 582
    Sec3_C; Exocyst complex component Sec3
Nucleotide Protein
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