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PAS_chr2-1_0672 Scaffold protein responsible for pre-autophagosomal structure organization [ Komagataella phaffii GS115 ]

Gene ID: 8199285, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr2-1_0672
Gene description
Scaffold protein responsible for pre-autophagosomal structure organization
Locus tag
PAS_chr2-1_0672
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr2-1_0672 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_012964.1 (1279120..1280481)

Chromosome 2 - NC_012964.1Genomic Context describing neighboring genes Neighboring gene Essential protein of the mitochondrial intermembrane space (IMS) Neighboring gene Hypothetical protein Neighboring gene Mitochondrial threonyl-tRNA synthetase Neighboring gene Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012964.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in activation of protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in piecemeal microautophagy of the nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Atg1/ULK1 kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Scaffold protein responsible for pre-autophagosomal structure organization

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012964.1 Reference assembly

    Range
    1279120..1280481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002491553.1 → XP_002491598.1  Scaffold protein responsible for pre-autophagosomal structure organization [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002491598.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4R1E4, F2QSB8
    Conserved Domains (1) summary
    pfam04108
    Location:7 → 412
    APG17; Autophagy protein Apg17
Nucleotide Protein
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