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SCPL27 serine carboxypeptidase-like 27 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819990, updated on 18-Sep-2024

Summary

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Official Symbol
SCPL27
Official Full Name
serine carboxypeptidase-like 27
Primary source
TAIR:AT3G07990
Locus tag
AT3G07990
See related
Araport:AT3G07990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
serine carboxypeptidase-like 27
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Genomic context

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See SCPL27 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (2552394..2554921)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Phosphatidylinositol-4-phosphate 5-kinase family protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene mitogen-activated protein kinase kinase kinase 6 Neighboring gene ncRNA Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene PHD finger family protein Neighboring gene RNA binding protein Neighboring gene DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_111678.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables serine-type carboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
serine carboxypeptidase-like 27
NP_187456.1
  • serine carboxypeptidase-like 27 (SCPL27); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 26 (TAIR:AT2G35780.1); Has 3547 Blast hits to 3487 proteins in 342 species: Archae - 0; Bacteria - 132; Metazoa - 639; Fungi - 851; Plants - 1534; Viruses - 0; Other Eukaryotes - 391 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2552394..2554921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111678.3 → NP_187456.1  serine carboxypeptidase-like 27 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187456.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SFB5
    UniProtKB/TrEMBL
    A0A178VCK8, A0A5S9XA53
    Conserved Domains (1) summary
    pfam00450
    Location:38 → 451
    Peptidase_S10; Serine carboxypeptidase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SFB5.1

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