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Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820059, updated on 18-Sep-2024

Summary

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Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT3G09060
Locus tag
AT3G09060
See related
Araport:AT3G09060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (2765812..2768499, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene 8-amino-7-oxononanoate synthase Neighboring gene uncharacterized protein Neighboring gene LOW protein: UPF0503-like protein, putative (DUF740) Neighboring gene Transducin/WD40 repeat-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interplay of endonucleolytic and exonucleolytic processing in the 3'-end formation of a mitochondrial nad2 RNA precursor in Arabidopsis. Wang C, et al. Nucleic Acids Res, 2023 Aug 11. PMID 37293952, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001337799.1
NM_111740.2

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_001319507.1
  • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 58888 Blast hits to 14270 proteins in 310 species: Archae - 10; Bacteria - 38; Metazoa - 658; Fungi - 1156; Plants - 55027; Viruses - 0; Other Eukaryotes - 1999 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2765812..2768499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001337799.1 → NP_001319507.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SS81
    UniProtKB/TrEMBL
    A0A178VJY3
    Conserved Domains (4) summary
    PLN03218
    Location:147 → 580
    PLN03218; maturation of RBCL 1; Provisional
    TIGR00756
    Location:570 → 603
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:151 → 178
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:603 → 650
    PPR_2; PPR repeat family

  2. NM_111740.2 → NP_187518.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187518.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SS81
    UniProtKB/TrEMBL
    A0A178VJY3
    Conserved Domains (4) summary
    PLN03218
    Location:147 → 580
    PLN03218; maturation of RBCL 1; Provisional
    TIGR00756
    Location:570 → 603
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:151 → 178
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:603 → 650
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SS81.1

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