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Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820369, updated on 18-Sep-2024

Summary

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Official Full Name
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Primary source
TAIR:AT3G11960
Locus tag
AT3G11960
See related
Araport:AT3G11960
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
16
Sequence:
Chromosome: 3; NC_003074.8 (3786314..3793728)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene homogentisate prenyltransferase Neighboring gene TRAF-like superfamily protein Neighboring gene RIBOSOMAL RNA PROCESSING 5 Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_112029.4
NM_180234.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
NP_187802.2
  • Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1A (TAIR:AT4G05420.1); Has 1073 Blast hits to 789 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 332; Fungi - 287; Plants - 277; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).
NP_850565.1
  • Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1A (TAIR:AT4G05420.2); Has 954 Blast hits to 777 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 323; Fungi - 233; Plants - 246; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3786314..3793728
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001337966.1 → NP_001327782.1  Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XBB9, A0A654F7D2, Q84R20
    Conserved Domains (2) summary
    pfam03178
    Location:1069 → 1330
    CPSF_A; CPSF A subunit region
    pfam10433
    Location:116 → 674
    MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term

  2. NM_001337967.1 → NP_001327783.1  Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LTD6, A0A654F7D2

  3. NM_112029.4 → NP_187802.2  Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187802.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XBB9, A0A654F7D2, Q84R20
    Conserved Domains (2) summary
    pfam03178
    Location:1069 → 1330
    CPSF_A; CPSF A subunit region
    pfam10433
    Location:116 → 674
    MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term

  4. NM_180234.2 → NP_850565.1  Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850565.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J8K5, Q9SF03
    Conserved Domains (2) summary
    pfam03178
    Location:884 → 1280
    CPSF_A; CPSF A subunit region
    pfam10433
    Location:116 → 616
    MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term
Nucleotide Protein
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