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ECA1 gametogenesis family protein (DUF784) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820373, updated on 18-Sep-2024

Summary

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Official Full Name
ECA1 gametogenesis family protein (DUF784)
Primary source
TAIR:AT3G11990
Locus tag
AT3G11990
See related
Araport:AT3G11990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MEC18.12
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (3817294..3817946)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Jojoba acyl CoA reductase-related male sterility protein Neighboring gene S-locus related protein SLR1, putative (S1) Neighboring gene C18orf8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_112033.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ECA1 gametogenesis family protein (DUF784)
NP_566408.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: downregulated in DIF1 18 (TAIR:AT1G45190.1); Has 78 Blast hits to 78 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3817294..3817946
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112033.1 → NP_566408.1  ECA1 gametogenesis family protein (DUF784) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566408.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V6M0, Q9LHM2
    Conserved Domains (1) summary
    pfam05617
    Location:86 → 156
    Prolamin_like; Prolamin-like
Nucleotide Protein
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